Ignoring the UI for a second, you can see what devices incus added to it with incus config device show . This is a source of truth in the sense that this is the config incus is actually using. If that shows 2 nics, and UI shows 1, the UI is broken. The two nics you have in the 00:16:3e range are definitely virtual nics (xen, incus, etc). So i assume config device show will tell you that there are two nics in the config, and it will turn out to be a UI issue.
If they don’t show up in the incus config, then something inside the VM itself is creating them.