For reference here is the output of lspci -vvv ( I did not see anything odd there ). Having said that I did get it to work by moving up the network card to another slot. No other changes needed to be done. After TrueNas Scale was restarted the NIC showed up in my networking.
Thanks everyone for your help on this.
81:00.0 Ethernet controller: Intel Corporation 82599ES 10-Gigabit SFI/SFP+ Network Connection (rev 01)
Subsystem: Intel Corporation Ethernet Server Adapter X520-2
Control: I/O+ Mem+ BusMaster- SpecCycle- MemWINV- VGASnoop- ParErr- Stepping- SERR- FastB2B- DisINTx-
Status: Cap+ 66MHz- UDF- FastB2B- ParErr- DEVSEL=fast >TAbort- <TAbort- <MAbort- >SERR- <PERR- INTx-
Interrupt: pin A routed to IRQ 113
NUMA node: 1
IOMMU group: 4
Region 2: I/O ports at 9020 [size=32]
Expansion ROM at c8500000 [disabled] [size=512K]
Capabilities: [40] Power Management version 3
Flags: PMEClk- DSI+ D1- D2- AuxCurrent=0mA PME(D0+,D1-,D2-,D3hot+,D3cold-)
Status: D0 NoSoftRst- PME-Enable- DSel=0 DScale=1 PME-
Capabilities: [50] MSI: Enable- Count=1/1 Maskable+ 64bit+
Address: 0000000000000000 Data: 0000
Masking: 00000000 Pending: 00000000
Capabilities: [70] MSI-X: Enable- Count=64 Masked-
Vector table: BAR=3 offset=00000000
PBA: BAR=3 offset=00002000
Capabilities: [a0] Express (v2) Endpoint, MSI 00
DevCap: MaxPayload 512 bytes, PhantFunc 0, Latency L0s <512ns, L1 <64us
ExtTag- AttnBtn- AttnInd- PwrInd- RBE+ FLReset+ SlotPowerLimit 0W
DevCtl: CorrErr- NonFatalErr- FatalErr- UnsupReq-
RlxdOrd+ ExtTag- PhantFunc- AuxPwr- NoSnoop+ FLReset-
MaxPayload 256 bytes, MaxReadReq 4096 bytes
DevSta: CorrErr- NonFatalErr- FatalErr- UnsupReq- AuxPwr- TransPend-
LnkCap: Port #0, Speed 5GT/s, Width x8, ASPM L0s, Exit Latency L0s <1us
ClockPM- Surprise- LLActRep- BwNot- ASPMOptComp-
LnkCtl: ASPM Disabled; RCB 64 bytes, Disabled- CommClk+
ExtSynch- ClockPM- AutWidDis- BWInt- AutBWInt-
LnkSta: Speed 5GT/s, Width x8
TrErr- Train- SlotClk+ DLActive- BWMgmt- ABWMgmt-
DevCap2: Completion Timeout: Range ABCD, TimeoutDis+ NROPrPrP- LTR-
10BitTagComp- 10BitTagReq- OBFF Not Supported, ExtFmt- EETLPPrefix-
EmergencyPowerReduction Not Supported, EmergencyPowerReductionInit-
FRS- TPHComp- ExtTPHComp-
DevCtl2: Completion Timeout: 65ms to 210ms, TimeoutDis- LTR- 10BitTagReq- OBFF Disabled,
AtomicOpsCtl: ReqEn-
LnkCtl2: Target Link Speed: 5GT/s, EnterCompliance- SpeedDis-
Transmit Margin: Normal Operating Range, EnterModifiedCompliance- ComplianceSOS-
Compliance Preset/De-emphasis: -6dB de-emphasis, 0dB preshoot
LnkSta2: Current De-emphasis Level: -6dB, EqualizationComplete- EqualizationPhase1-
EqualizationPhase2- EqualizationPhase3- LinkEqualizationRequest-
Retimer- 2Retimers- CrosslinkRes: unsupported
Capabilities: [100 v1] Advanced Error Reporting
UESta: DLP- SDES- TLP- FCP- CmpltTO- CmpltAbrt- UnxCmplt- RxOF- MalfTLP- ECRC- UnsupReq- ACSViol-
UEMsk: DLP- SDES- TLP- FCP- CmpltTO- CmpltAbrt+ UnxCmplt+ RxOF- MalfTLP- ECRC- UnsupReq- ACSViol-
UESvrt: DLP+ SDES- TLP+ FCP+ CmpltTO+ CmpltAbrt- UnxCmplt- RxOF+ MalfTLP+ ECRC+ UnsupReq- ACSViol-
CESta: RxErr- BadTLP- BadDLLP- Rollover- Timeout- AdvNonFatalErr-
CEMsk: RxErr+ BadTLP+ BadDLLP+ Rollover+ Timeout+ AdvNonFatalErr+
AERCap: First Error Pointer: 00, ECRCGenCap+ ECRCGenEn+ ECRCChkCap+ ECRCChkEn+
MultHdrRecCap- MultHdrRecEn- TLPPfxPres- HdrLogCap-
HeaderLog: 00000000 00000000 00000000 00000000
Capabilities: [140 v1] Device Serial Number 00-00-00-ff-ff-00-00-00
Capabilities: [150 v1] Alternative Routing-ID Interpretation (ARI)
ARICap: MFVC- ACS-, Next Function: 1
ARICtl: MFVC- ACS-, Function Group: 0
Capabilities: [160 v1] Single Root I/O Virtualization (SR-IOV)
IOVCap: Migration- 10BitTagReq- Interrupt Message Number: 000
IOVCtl: Enable- Migration- Interrupt- MSE- ARIHierarchy+ 10BitTagReq-
IOVSta: Migration-
Initial VFs: 64, Total VFs: 64, Number of VFs: 0, Function Dependency Link: 00
VF offset: 128, stride: 2, Device ID: 10ed
Supported Page Size: 00000553, System Page Size: 00000001
Region 0: Memory at 000003c000300000 (64-bit, prefetchable)
Region 3: Memory at 000003c000200000 (64-bit, prefetchable)
VF Migration: offset: 00000000, BIR: 0
Kernel modules: ixgbe
81:00.1 Ethernet controller: Intel Corporation 82599ES 10-Gigabit SFI/SFP+ Network Connection (rev 01)
Subsystem: Intel Corporation Ethernet Server Adapter X520-2
Control: I/O+ Mem+ BusMaster- SpecCycle- MemWINV- VGASnoop- ParErr- Stepping- SERR- FastB2B- DisINTx-
Status: Cap+ 66MHz- UDF- FastB2B- ParErr- DEVSEL=fast >TAbort- <TAbort- <MAbort- >SERR- <PERR- INTx-
Interrupt: pin B routed to IRQ 113
NUMA node: 1
IOMMU group: 5
Region 2: I/O ports at 9000 [size=32]
Expansion ROM at c8580000 [disabled] [size=512K]
Capabilities: [40] Power Management version 3
Flags: PMEClk- DSI+ D1- D2- AuxCurrent=0mA PME(D0+,D1-,D2-,D3hot+,D3cold-)
Status: D0 NoSoftRst- PME-Enable- DSel=0 DScale=1 PME-
Capabilities: [50] MSI: Enable- Count=1/1 Maskable+ 64bit+
Address: 0000000000000000 Data: 0000
Masking: 00000000 Pending: 00000000
Capabilities: [70] MSI-X: Enable- Count=64 Masked-
Vector table: BAR=3 offset=00000000
PBA: BAR=3 offset=00002000
Capabilities: [a0] Express (v2) Endpoint, MSI 00
DevCap: MaxPayload 512 bytes, PhantFunc 0, Latency L0s <512ns, L1 <64us
ExtTag- AttnBtn- AttnInd- PwrInd- RBE+ FLReset+ SlotPowerLimit 0W
DevCtl: CorrErr- NonFatalErr- FatalErr- UnsupReq-
RlxdOrd+ ExtTag- PhantFunc- AuxPwr- NoSnoop+ FLReset-
MaxPayload 256 bytes, MaxReadReq 4096 bytes
DevSta: CorrErr- NonFatalErr- FatalErr- UnsupReq- AuxPwr- TransPend-
LnkCap: Port #0, Speed 5GT/s, Width x8, ASPM L0s, Exit Latency L0s <1us
ClockPM- Surprise- LLActRep- BwNot- ASPMOptComp-
LnkCtl: ASPM Disabled; RCB 64 bytes, Disabled- CommClk+
ExtSynch- ClockPM- AutWidDis- BWInt- AutBWInt-
LnkSta: Speed 5GT/s, Width x8
TrErr- Train- SlotClk+ DLActive- BWMgmt- ABWMgmt-
DevCap2: Completion Timeout: Range ABCD, TimeoutDis+ NROPrPrP- LTR-
10BitTagComp- 10BitTagReq- OBFF Not Supported, ExtFmt- EETLPPrefix-
EmergencyPowerReduction Not Supported, EmergencyPowerReductionInit-
FRS- TPHComp- ExtTPHComp-
DevCtl2: Completion Timeout: 65ms to 210ms, TimeoutDis- LTR- 10BitTagReq- OBFF Disabled,
AtomicOpsCtl: ReqEn-
LnkSta2: Current De-emphasis Level: -6dB, EqualizationComplete- EqualizationPhase1-
EqualizationPhase2- EqualizationPhase3- LinkEqualizationRequest-
Retimer- 2Retimers- CrosslinkRes: unsupported
Capabilities: [100 v1] Advanced Error Reporting
UESta: DLP- SDES- TLP- FCP- CmpltTO- CmpltAbrt- UnxCmplt- RxOF- MalfTLP- ECRC- UnsupReq- ACSViol-
UEMsk: DLP- SDES- TLP- FCP- CmpltTO- CmpltAbrt+ UnxCmplt+ RxOF- MalfTLP- ECRC- UnsupReq- ACSViol-
UESvrt: DLP+ SDES- TLP+ FCP+ CmpltTO+ CmpltAbrt- UnxCmplt- RxOF+ MalfTLP+ ECRC+ UnsupReq- ACSViol-
CESta: RxErr- BadTLP- BadDLLP- Rollover- Timeout- AdvNonFatalErr-
CEMsk: RxErr+ BadTLP+ BadDLLP+ Rollover+ Timeout+ AdvNonFatalErr+
AERCap: First Error Pointer: 00, ECRCGenCap+ ECRCGenEn+ ECRCChkCap+ ECRCChkEn+
MultHdrRecCap- MultHdrRecEn- TLPPfxPres- HdrLogCap-
HeaderLog: 00000000 00000000 00000000 00000000
Capabilities: [140 v1] Device Serial Number 00-00-00-ff-ff-00-00-00
Capabilities: [150 v1] Alternative Routing-ID Interpretation (ARI)
ARICap: MFVC- ACS-, Next Function: 0
ARICtl: MFVC- ACS-, Function Group: 0
Capabilities: [160 v1] Single Root I/O Virtualization (SR-IOV)
IOVCap: Migration- 10BitTagReq- Interrupt Message Number: 000
IOVCtl: Enable- Migration- Interrupt- MSE- ARIHierarchy- 10BitTagReq-
IOVSta: Migration-
Initial VFs: 64, Total VFs: 64, Number of VFs: 0, Function Dependency Link: 01
VF offset: 128, stride: 2, Device ID: 10ed
Supported Page Size: 00000553, System Page Size: 00000001
Region 0: Memory at 000003c000100000 (64-bit, prefetchable)
Region 3: Memory at 000003c000000000 (64-bit, prefetchable)
VF Migration: offset: 00000000, BIR: 0
Kernel modules: ixgbe