Except for Transmission there are several apps that have been Stopped that need updating. Apps will not update unless they are running. This is a requirement not an option. Press start on the stopped apps. If things are stuck waiting for transmission to complete, then stop that app., Start and allow the update of the others, then go back and figure out the issue with Transmission.
From what i can decipher from the logs, it may be that those apps are stuck in the background.
Jellyfin and Transmition say that the port they want to use is already in use
Immich fails beacuse it can’t see a container it needs
I’d propably stop all apps and then check from shell with
docker ps -a
if it would still list any running container. If it lists any running container even though you stopped them all from the gui the next step should be to find out how to kill those running container
checked the docker ps -a command you shared it was empty. But when I booted the different apps I started getting this for transmission, tailscale and jellyfin
Just to be clear about this message: “Applications are unaffected” is a ZFS message, and it’s referring to anything that might be using data on the pool in question–it doesn’t, at least directly, have anything to do with “apps.” And “unaffected” means that they should be able to use the data as normal–there will be some loss of performance during resilvering.