I have working installation of 24.10.2.1 with 6 SATA drives in a single pool direct connect to the motherboard, another 6 SATA drives making up various other pools connected to a LSI SAS3008 external PCI card, and 4 m.2 PCI-E cards making up another single pool connected to the motherboard. System is a ZimaCube Pro for reference. Also, TrueNAS is running as a VM in Proxmox.
When I upgrade from the current install to Fangtooth 25.04.0, all the PCI expansion (SAS3008 and all m.2 drives) stops working. There is an error during boot, but it goes by too fast to read. All pools still show in the dashboard with the error “Offline Vdevs”. Going to System > Boot and selecting my 24.10.2.1 environment and rebooting gets me back to a working system.
Any idea what is causing my issues?